eReefs Research

Peer-reviewed Publications

The peer-reviewed publications listed on this page reference, cite, acknowledge or are a direct output from eReefs research and projects.

For other related eReefs model input references, please see References

If you use the eReefs model outputs, software or platforms in your research, please include the following acknowledgement:

“The eReefs model simulations were produced as part of the eReefs project (eReefs.info), a collaboration between the Science Industry Endowment Fund (SIEF), the Commonwealth Scientific Industrial Research Organisation (CSIRO), the Australian Institute of Marine Science (AIMS), the Bureau of Meteorology (BOM), and the Great Barrier Reef Foundation (GBRF), with support from BHP Billinton Mitsubishi Alliance, the Australian and Queensland governments, and with observations obtained through the Integrated Marine Observing System (IMOS).”

Published in 2025

[99] Maggiorano, A. Baird, M. Langlais, C. Mongin, M. Skerratt, J. (2025). Impact of phytoplankton, CDOM, and suspended sediments on the vertical attenuation of light, changing heat content and circulation on a continental shelf: A modelling study of the Great Barrier Reef. Ocean Modelling, 193. 10.1016/j.ocemod.2024.102465

Published in 2024

[98] Sun, C. Steinberg, C. Klein Salas, E. Mellin, C. Babcock, R. Schiller, A. Cantin, N. Stella, J. Baird, M. Condie, S. Hobday, A. Herzfeld, M. Jones, N. Zhang, X. Chamberlain, M. Fiedler, R. Green, C. Steven, A. (2024). Climate refugia in the Great Barrier Reef may endure into the future. Science Advances, 10 (48). 10.1126/sciadv.ado6884

[97] Sun, C. Steinberg, C. Klein Salas, E. Mellin, C. Babcock, R. Schiller, A. Cantin, N. Stella, J. Baird, M. Condie, S. Hobday, A. Herzfeld, M. Jones, N. Zhang, X. Chamberlain, M. Fiedler, R. Green, C. Steven, A. (2024). Climate refugia in the Great Barrier Reef may endure into the future. Science Advances, 10 (48). 10.1126/sciadv.ado6884

[96] Skinner, C. Bozec, Y. Matthews, S. Williamson, D. Beeden, R. Mumby, P. (2024). Advancing projections of crown-of-thorns starfish to support management interventions. Science of The Total Environment, 950. 10.1016/j.scitotenv.2024.175282

[95] Álvarez‐Noriega, M. Ortiz, J. Ceccarelli, D. Emslie, M. Fabricius, K. Jonker, M. Puotinen, M. Robson, B. Roelfsema, C. Sinclair‐Taylor, T. Ferrari, R. (2024). Spatial Variation in Upper Limits of Coral Cover on the Great Barrier Reef. Global Ecology and Biogeography, 33 (12). 10.1111/geb.13928

[94] Rogers, J. Plagányi, É. Blamey, L. Desbiens, A. (2024). Validating effectiveness of crown-of-thorns starfish control thresholds to limit coral loss throughout the Great Barrier Reef. Coral Reefs, 43 (6). 10.1007/s00338-024-02560-2

[93] Cresswell, A. Haller-Bull, V. Gonzalez-Rivero, M. Gilmour, J. Bozec, Y. Barneche, D. Robson, B. Anthony, K. Doropoulos, C. Roelfsema, C. Lyons, M. Mumby, P. Condie, S. Lago, V. Ortiz, J. (2024). Capturing fine-scale coral dynamics with a metacommunity modelling framework. Scientific Reports, 14 (1). 10.1038/s41598-024-73464-y

[92] Scofield, J. Prime, E. Flores, F. Severati, A. Mongin, M. Bougeot, E. Baird, M. Negri, A. Qiao, G. (2024). The Development of a Floating Mono-Particle “Sun Shield” to Protect Corals from High Irradiance during Bleaching Conditions. Journal of Marine Science and Engineering, 12 (10). 10.3390/jmse12101809

[91] Naugle, M. Denis, H. Mocellin, V. Laffy, P. Popovic, I. Bay, L. Howells, E. (2024). Heat tolerance varies considerably within a reef-building coral species on the Great Barrier Reef. Communications Earth & Environment, 5 (1). 10.1038/s43247-024-01649-4

[90] Ani, C. Haller-Bull, V. Gilmour, J. Robson, B. (2024). Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters. Scientific Reports, 14 (1). 10.1038/s41598-024-64388-8

[89] Webster, E. Duce, S. Hamann, M. Murray, N. Shimada, T. Limpus, C. (2024). Should I stay or should I go? The influence of environmental conditions on green turtle residence time and outward transit in foraging areas. Marine Biology, 171 (7). 10.1007/s00227-024-04450-1

[88] Matthews, S. Williamson, D. Beeden, R. Emslie, M. Abom, R. Beard, D. Bonin, M. Bray, P. Campili, A. Ceccarelli, D. Fernandes, L. Fletcher, C. Godoy, D. Hemingson, C. Jonker, M. Lang, B. Morris, S. Mosquera, E. Phillips, G. Sinclair-Taylor, T. Taylor, S. Tracey, D. Wilmes, J. Quincey, R. (2024). Protecting Great Barrier Reef resilience through effective management of crown-of-thorns starfish outbreaks. PLOS ONE, 19 (4). 10.1371/journal.pone.0298073

[87] Harrison, D. (2024). An Overview of Environmental Engineering Methods for Reducing Coral Bleaching Stress. Oceanographic Processes of Coral Reefs. 10.1201/9781003320425-31

[86] Ani, C. Baird, M. Robson, B. (2024). Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef. Ecological Modelling, 487. 10.1016/j.ecolmodel.2023.110567

Published in 2023

[85] Mentzel, S. Nathan, R. Noyes, P. Brix, K. Moe, S. Rohr, J. Verheyen, J. Van den Brink, P. Stauber, J. (2023). Evaluating the effects of climate change and chemical, physical, and biological stressors on nearshore coral reefs: A case study in the Great Barrier Reef, Australia. Integrated Environmental Assessment and Management, 20 (2). 10.1002/ieam.4871

[84] Xiao, Z. Carlin, G. Steven, A. Livsey, D. Song, D. Crosswell, J. (2023). A measurement-to-modelling approach to understand catchment-to-reef processes: sediment transport in a highly turbid estuary. Frontiers in Marine Science, 10. 10.3389/fmars.2023.1215161

[83] Kroon, F. Crosswell, J. Robson, B. (2023). The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone. Marine Pollution Bulletin, 195. 10.1016/j.marpolbul.2023.115255

[82] Skerratt, J. Baird, M. Mongin, M. Ellis, R. Smith, R. Shaw, M. Steven, A. (2023). Dispersal of the pesticide diuron in the Great Barrier Reef. Science of The Total Environment, 879. 10.1016/j.scitotenv.2023.163041

[81] Castro‐Sanguino, C. Bozec, Y. Condie, S. Fletcher, C. Hock, K. Roelfsema, C. Westcott, D. Mumby, P. (2023). Control efforts of crown‐of‐thorns starfish outbreaks to limit future coral decline across the Great Barrier Reef. Ecosphere, 14 (6). 10.1002/ecs2.4580

[80] Ani, C. Smithers, S. Lewis, S. Baird, M. Robson, B. (2023). eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 285. 10.1016/j.ecss.2023.108306

[79] Patricio-Valerio, L. Schroeder, T. Devlin, M. Qin, Y. Smithers, S. (2023). Meteorological Satellite Observations Reveal Diurnal Exceedance of Water Quality Guideline Thresholds in the Coastal Great Barrier Reef. Remote Sensing, 15 (9). 10.3390/rs15092335

[78] McGowan, H. Theobald, A. (2023). Atypical weather patterns cause coral bleaching on the Great Barrier Reef, Australia during the 2021–2022 La Niña. Scientific Reports, 13 (1). 10.1038/s41598-023-33613-1

[77] Blondeau-Patissier, D. Schroeder, T. Suresh, G. Li, Z. Diakogiannis, F. Irving, P. Witte, C. Steven, A. (2023). Detection of marine oil-like features in Sentinel-1 SAR images by supplementary use of deep learning and empirical methods: Performance assessment for the Great Barrier Reef marine park. Marine Pollution Bulletin, 188. 10.1016/j.marpolbul.2023.114598

[76] Page, C. Giuliano, C. Bay, L. Randall, C. (2023). High survival following bleaching underscores the resilience of a frequently disturbed region of the Great Barrier Reef. Ecosphere, 14 (2). 10.1002/ecs2.4280

[75] Fabricius, K. Crossman, K. Jonker, M. Mongin, M. Thompson, A. (2023). Macroalgal cover on coral reefs: Spatial and environmental predictors, and decadal trends in the Great Barrier Reef. PLOS ONE, 18 (1). 10.1371/journal.pone.0279699

[74] Ani, C. (2023). Biogeochemical modelling of tropical marine ecosystems in the context of climate change. 10.25903/CZAT-0D72 https://researchonline.jcu.edu.au/81266/

Published in 2022

[73] Andrews, E. Irving, A. Sherman, C. Jackson, E. (2023). Spatio-temporal analysis of the environmental ranges and phenotypic traits of Zostera muelleri subpopulations in Central Queensland. Estuarine, Coastal and Shelf Science, 281. 10.1016/j.ecss.2022.108191

[72] Sun, C. Hobday, A. Condie, S. Baird, M. Eveson, J. Hartog, J. Richardson, A. Steven, A. Wild-Allen, K. Babcock, R. Yang, D. Yu, R. Mongin, M. (2022). Ecological Forecasting and Operational Information Systems Support Sustainable Ocean Management. Forecasting, 4 (4). 10.3390/forecast4040057

[71] Gurdek-Bas, R. Benthuysen, J. Harrison, H. Zenger, K. van Herwerden, L. (2022). The El Niño Southern Oscillation drives multidirectional inter-reef larval connectivity in the Great Barrier Reef. Scientific Reports, 12 (1). 10.1038/s41598-022-25629-w

[70] Condie, S. (2022). Changing the climate risk trajectory for coral reefs. Frontiers in Climate, 4. 10.3389/fclim.2022.980035

[69] Jahanbakht, M. Xiang, W. Azghadi, M. (2022). Sediment Prediction in the Great Barrier Reef using Vision Transformer with finite element analysis. Neural Networks, 152. 10.1016/j.neunet.2022.04.022

[68] Livsey, D. Crosswell, J. Turner, R. Steven, A. Grace, P. (2022). Flocculation of Riverine Sediment Draining to the Great Barrier Reef, Implications for Monitoring and Modeling of Sediment Dispersal Across Continental Shelves. Journal of Geophysical Research: Oceans, 127 (7). 10.1029/2021jc017988

[67] Jahanbakht, M. Xiang, W. Robson, B. Azghadi, M. (2022). Nitrogen prediction in the Great Barrier Reef using finite element analysis with deep neural networks. Environmental Modelling & Software, 150. 10.1016/j.envsoft.2022.105311

[66] Schroeder, T. Schaale, M. Lovell, J. Blondeau-Patissier, D. (2022). An ensemble neural network atmospheric correction for Sentinel-3 OLCI over coastal waters providing inherent model uncertainty estimation and sensor noise propagation. Remote Sensing of Environment, 270. 10.1016/j.rse.2021.112848

[65] Bozec, Y. Hock, K. Mason, R. Baird, M. Castro‐Sanguino, C. Condie, S. Puotinen, M. Thompson, A. Mumby, P. (2021). Cumulative impacts across Australia’s Great Barrier Reef: a mechanistic evaluation. Ecological Monographs, 92 (1). 10.1002/ecm.1494

Published in 2022

[64] Cheung, M. Hock, K. Skirving, W. Mumby, P. (2021). Cumulative bleaching undermines systemic resilience of the Great Barrier Reef. Current Biology, 31 (23). 10.1016/j.cub.2021.09.078

[63] Stoeckl, N. Condie, S. Anthony, K. (2021). Assessing changes to ecosystem service values at large geographic scale: A case study for Australia’s Great Barrier Reef. Ecosystem Services, 51. 10.1016/j.ecoser.2021.101352

[62] Mumby, P. Mason, R. Hock, K. (2021). Reconnecting reef recovery in a world of coral bleaching. Limnology and Oceanography: Methods, 19 (10). 10.1002/lom3.10455

[61] Baird, M. Mongin, M. Rizwi, F. Bay, L. Cantin, N. Morris, L. Skerratt, J. (2021). The effect of natural and anthropogenic nutrient and sediment loads on coral oxidative stress on runoff-exposed reefs. Marine Pollution Bulletin, 168. 10.1016/j.marpolbul.2021.112409

[60] Baird, M. Mongin, M. Skerratt, J. Margvelashvili, N. Tickell, S. Steven, A. Robillot, C. Ellis, R. Waters, D. Kaniewska, P. Brodie, J. (2021). Impact of catchment-derived nutrients and sediments on marine water quality on the Great Barrier Reef: An application of the eReefs marine modelling system. Marine Pollution Bulletin, 167. 10.1016/j.marpolbul.2021.112297

[59] Mongin, M. Baird, M. Lenton, A. Neill, C. Akl, J. (2021). Reversing ocean acidification along the Great Barrier Reef using alkalinity injection. Environmental Research Letters, 16 (6). 10.1088/1748-9326/ac002d

[58] Castro-Sanguino, C. Ortiz, J. Thompson, A. Wolff, N. Ferrari, R. Robson, B. Magno-Canto, M. Puotinen, M. Fabricius, K. Uthicke, S. (2021). Reef state and performance as indicators of cumulative impacts on coral reefs. Ecological Indicators, 123. 10.1016/j.ecolind.2020.107335

[57] McCloskey, G. Baheerathan, R. Dougall, C. Ellis, R. Bennett, F. Waters, D. Darr, S. Fentie, B. Hateley, L. Askildsen, M. (2021). Modelled estimates of fine sediment and particulate nutrients delivered from the Great Barrier Reef catchments. Marine Pollution Bulletin, 165. 10.1016/j.marpolbul.2021.112163

[56] Condie, S. Anthony, K. Babcock, R. Baird, M. Beeden, R. Fletcher, C. Gorton, R. Harrison, D. Hobday, A. Plagányi, É. Westcott, D. (2021). Large-scale interventions may delay decline of the Great Barrier Reef. Royal Society Open Science, 8 (4). 10.1098/rsos.201296

[55] Conroy, G. (2021). Can a Cold Water Bath Save the Great Barrier Reef?. https://hakaimagazine.com/news/can-a-cold-water-bath-save-the-great-barrier-reef/

[54] McNeil, M. Nothdurft, L. Erler, D. Hua, Q. Webster, J. (2021). Variations in Mid‐ to Late Holocene Nitrogen Supply to Northern Great Barrier Reef Halimeda Macroalgal Bioherms. Paleoceanography and Paleoclimatology, 36 (2). 10.1029/2020pa003871

Published in 2020

[53] Baird, M. Green, R. Lowe, R. Mongin, M. Bougeot, E. (2020). Optimising cool-water injections to reduce thermal stress on coral reefs of the Great Barrier Reef. PLOS ONE, 15 (10). 10.1371/journal.pone.0239978

[52] Khan, U. Cook, F. Laugesen, R. Hasan, M. Plastow, K. Amirthanathan, G. Bari, M. Tuteja, N. (2020). Development of catchment water quality models within a realtime status and forecast system for the Great Barrier Reef. Environmental Modelling & Software, 132. 10.1016/j.envsoft.2020.104790

[51] Baird, M. Wild-Allen, K. Parslow, J. Mongin, M. Robson, B. Skerratt, J. Rizwi, F. Soja-Woźniak, M. Jones, E. Herzfeld, M. Margvelashvili, N. Andrewartha, J. Langlais, C. Adams, M. Cherukuru, N. Gustafsson, M. Hadley, S. Ralph, P. Rosebrock, U. Schroeder, T. Laiolo, L. Harrison, D. Steven, A. (2020). CSIRO Environmental Modelling Suite (EMS): scientific description of the optical and biogeochemical models (vB3p0). Geoscientific Model Development, 13 (9). 10.5194/gmd-13-4503-2020

[50] Frade, P. Glasl, B. Matthews, S. Mellin, C. Serrão, E. Wolfe, K. Mumby, P. Webster, N. Bourne, D. (2020). Spatial patterns of microbial communities across surface waters of the Great Barrier Reef. Communications Biology, 3 (1). 10.1038/s42003-020-01166-y

[49] Robson, B. Skerratt, J. Baird, M. Davies, C. Herzfeld, M. Jones, E. Mongin, M. Richardson, A. Rizwi, F. Wild-Allen, K. Steven, A. (2020). Enhanced assessment of the eReefs biogeochemical model for the Great Barrier Reef using the Concept/State/Process/System model evaluation framework. Environmental Modelling & Software, 129. 10.1016/j.envsoft.2020.104707

[48] Smith, J. Mongin, M. Thompson, A. Jonker, M. De'ath, G. Fabricius, K. (2020). Shifts in coralline algae, macroalgae, and coral juveniles in the Great Barrier Reef associated with present‐day ocean acidification. Global Change Biology, 26 (4). 10.1111/gcb.14985

[47] Steven, A. Baird, M. Carlin, G. Crosswell, J. Kenna, E. Rochester, W. Skerratt, J. Tickell, S. Wild, D. (2020). Continuous Monitoring and Model Parameterisation of Estuarine Water Quality entering the Great Barrier Reef. CSIRO. 10.25919/JBN1-QJ76 https://publications.csiro.au/publications/publication/PIcsiro:EP205540

Published in 2019

[46] Brinkman, R. Baird, M. Boswood, P. Fearns, P. Gruber, R. Holmes, M. Honchin, C. Johnson, R. Lewis, S. Lonborg, C. Mueller, J. Robillot, C. Schroeder, T. Steinberg, C. Treleaven, J. (2019). Monitoring the marine physical and chemical environment within the Reef 2050 Integrated Monitoring and Reporting Program: Final Report of the Marine Physical and Chemical Environment Expert Group. https://nla.gov.au/nla.obj-2964786400 https://hdl.handle.net/102.100.100/348749?index=1

[45] Harrison, D. Baird, M. Harrison, L. Utembe, S. Schofield, R. Escobar, R. Mongin, M. Rizwi, F. (2019). Reef Restoration and Adaptation Program: Environmental Modelling of Large Scale Solar Radiation Management. A report provided to the Australian Government by the Reef Restoration and Adaptation Program. https://gbrrestoration.org/wp-content/uploads/2020/09/T14-Environmental-Modelling-of-Large-Scale-SRM_v3.03-3.pdf

[44] Baird, M. Mongin, M. Bouget, E. (2019). Reef Restoration and Adaptation Program: Ultra-Thin Surface Films. A report provided to the Australian Government by the Reef Restoration and Adaptation Program. https://gbrrestoration.org/wp-content/uploads/2020/09/T13-Ultra-Thin-Surface-Films3.pdf https://hdl.handle.net/102.100.100/349197?index=1

[43] Anthony, K. Condie, S. Bozec, Y. Harrison, D. Gibbs, M. Baird, M. Mumby, P. Mead, D. (2019). Reef Restoration and Adaptation Program: Modelling Methods and Findings. A report provided to the Australian Government by the Reef Restoration and Adaptation Program. https://gbrrestoration.org/wp-content/uploads/2020/09/T6-Modelling-Methods-and-Findings_26April_FINAL3.pdf

[42] Steven, A. Baird, M. Brinkman, R. Car, N. Cox, S. Herzfeld, M. Hodge, J. Jones, E. King, E. Margvelashvili, N. Robillot, C. Robson, B. Schroeder, T. Skerratt, J. Tickell, S. Tuteja, N. Wild-Allen, K. Yu, J. (2019). eReefs: An operational information system for managing the Great Barrier Reef. Journal of Operational Oceanography, 12 (sup2). 10.1080/1755876x.2019.1650589

[41] Xiao, Y. Wang, X. Ritchie, E. Rizwi, F. Qiao, L. (2019). The development and evolution of the Burdekin River estuary freshwater plume during Cyclone Debbie (2017). Estuarine, Coastal and Shelf Science, 224. 10.1016/j.ecss.2019.04.037

[40] Soja‐Woźniak, M. Baird, M. Schroeder, T. Qin, Y. Clementson, L. Baker, B. Boadle, D. Brando, V. Steven, A. (2019). Particulate Backscattering Ratio as an Indicator of Changing Particle Composition in Coastal Waters: Observations From Great Barrier Reef Waters. Journal of Geophysical Research: Oceans, 124 (8). 10.1029/2019jc014998

[39] Hock, K. Doropoulos, C. Gorton, R. Condie, S. Mumby, P. (2019). Split spawning increases robustness of coral larval supply and inter-reef connectivity. Nature Communications, 10 (1). 10.1038/s41467-019-11367-7

[38] Herzfeld, M. Rizwi, F. (2019). A two-way nesting framework for ocean models. Environmental Modelling & Software, 117. 10.1016/j.envsoft.2019.03.015

[37] Baird, M. Margvelashvili, N. Cantin, N. (2019). Historical context and causes of water quality decline in the Whitsunday region. CSIRO Report to Department of Environment and Energy.. https://www.dcceew.gov.au/parks-heritage/great-barrier-reef/publications/historical-context-causes-water-quality-decline-whitsundays https://hdl.handle.net/102.100.100/349202?index=1

[36] Baird, M. Green, R. Lowe, R. (2019). Reef Restoration and Adaptation Program: Cool Water Injection. A report provided to the Australian Government by the Reef Restoration and Adaptation Program. https://gbrrestoration.org/wp-content/uploads/2020/09/T12-Cool-Water-Injection3.pdf https://hdl.handle.net/102.100.100/349198?index=1

[35] Skerratt, J. Mongin, M. Baird, M. Wild-Allen, K. Robson, B. Schaffelke, B. Davies, C. Richardson, A. Margvelashvili, N. Soja-Wozniak, M. Steven, A. (2019). Simulated nutrient and plankton dynamics in the Great Barrier Reef (2011–2016). Journal of Marine Systems, 192. 10.1016/j.jmarsys.2018.12.006

[34] Tickell, S. Dowideit, S. Wild, D. Kenna, E. Steven, A. Baird, M. Schroeder, T. Rizwi, F. Mongin, M. Blondeau-Patissier, D. King, E. (2019). eReefs Infrastructure 2019: Capacity to facilitate user access and scale-up of services. CSIRO. 10.25919/5EEA68383D375 https://publications.csiro.au/publications/publication/PIcsiro:EP194862

[33] Pausina, S. Greenwood, J. Pitt, K. Rissik, D. Rochester, W. Uribe-Palomino, J. Richardson, A. Skerratt, J. (2019). Zooplankton of Moreton Bay. 10.6084/M9.FIGSHARE.8074364 https://moretonbayfoundation.org/wp-content/uploads/2019/10/Moreton-Bay-Quandamooka-and-Catchment-book-edition-1-Aug-2019.pdf

Published in 2018

[32] Margvelashvili, N. Andrewartha, J. Baird, M. Herzfeld, M. Jones, E. Mongin, M. Rizwi, F. Robson, B. Skerratt, J. Wild-Allen, K. Steven, A. (2018). Simulated fate of catchment-derived sediment on the Great Barrier Reef shelf. Marine Pollution Bulletin, 135. 10.1016/j.marpolbul.2018.08.018

[31] Baird, M. Mongin, M. Rizwi, F. Bay, L. Cantin, N. Soja-Woźniak, M. Skerratt, J. (2018). A mechanistic model of coral bleaching due to temperature-mediated light-driven reactive oxygen build-up in zooxanthellae. Ecological Modelling, 386. 10.1016/j.ecolmodel.2018.07.013

[30] Wolff, N. da Silva, E. Devlin, M. Anthony, K. Lewis, S. Tonin, H. Brinkman, R. Mumby, P. (2018). Contribution of individual rivers to Great Barrier Reef nitrogen exposure with implications for management prioritization. Marine Pollution Bulletin, 133. 10.1016/j.marpolbul.2018.04.069

[29] Condie, S. Herzfeld, M. Hock, K. Andrewartha, J. Gorton, R. Brinkman, R. Schultz, M. (2018). System level indicators of changing marine connectivity. Ecological Indicators, 91. 10.1016/j.ecolind.2018.04.036

[28] Robson, B. Arhonditsis, G. Baird, M. Brebion, J. Edwards, K. Geoffroy, L. Hébert, M. van Dongen-Vogels, V. Jones, E. Kruk, C. Mongin, M. Shimoda, Y. Skerratt, J. Trevathan-Tackett, S. Wild-Allen, K. Kong, X. Steven, A. (2018). Towards evidence-based parameter values and priors for aquatic ecosystem modelling. Environmental Modelling & Software, 100. 10.1016/j.envsoft.2017.11.018

[27] Robillot, C. Logan, M. Baird, M. Waterhouse, J. Martin, K. Schaffelke, B. (2018). Testing and implementation of an improved water quality index for the 2016 and 2017 Great Barrier Reef Report Cards. https://nesptropical.edu.au/wp-content/uploads/2018/08/NESP-TWQ-Project-3.2.5-Final-Report.pdf

Published in 2017

[26] Robson, B. Andrewartha, J. Baird, M. Herzfeld, M. Jones, E. Margvelashvili, N. Mongin, M. Rizwi, F. Skerratt, J. Wild-Allen, K. (2017). Evaluating the eReefs Great Barrier Reef marine model against observed emergent properties. International Congress on Modelling and Simulation. 10.36334/modsim.2017.l22.robson

[25] Baird, M. Andrewartha, J. Herzfeld, M. Jones, E. Margvelashvili, N. Mongin, M. Rizwi, F. Skerratt, J. Soja-Woźniak, M. Wild-Allen, K. Schroeder, T. Robson, B. da Silva, E. Devlin, M. (2017). River plumes of the Great Barrier Reef: freshwater, sediment and optical footprints quantified by the eReefs modelling system. International Congress on Modelling and Simulation. 10.36334/modsim.2017.l22.bairn

[24] Brodie, J. Baird, M. Waterhouse, J. Mongin, M. Skerratt, J. Robillot, C. Smith, R. Mann, R. Warne, M. (2017). Development of basin-specific ecologically relevant water quality targets for the Great Barrier Reef.. 10.13140/RG.2.2.36754.35526 https://www.reefplan.qld.gov.au/__data/assets/pdf_file/0025/46096/gbr-water-quality-targets-june2017.pdf

Published in 2016

[23] Jones, E. Baird, M. Mongin, M. Parslow, J. Skerratt, J. Lovell, J. Margvelashvili, N. Matear, R. Wild-Allen, K. Robson, B. Rizwi, F. Oke, P. King, E. Schroeder, T. Steven, A. Taylor, J. (2016). Use of remote-sensing reflectance to constrain a data assimilating marine biogeochemical model of the Great Barrier Reef. Biogeosciences, 13 (23). 10.5194/bg-13-6441-2016

[22] Benthuysen, J. Tonin, H. Brinkman, R. Herzfeld, M. Steinberg, C. (2016). Intrusive upwelling in the Central Great Barrier Reef. Journal of Geophysical Research: Oceans, 121 (11). 10.1002/2016jc012294

[21] Albright, R. Anthony, K. Baird, M. Beeden, R. Byrne, M. Collier, C. Dove, S. Fabricius, K. Hoegh-Guldberg, O. Kelly, R. Lough, J. Mongin, M. Munday, P. Pears, R. Russell, B. Tilbrook, B. Abal, E. (2016). Ocean acidification: Linking science to management solutions using the Great Barrier Reef as a case study. Journal of Environmental Management, 182. 10.1016/j.jenvman.2016.07.038

[20] Margvelashvili, N. Herzfeld, M. Rizwi, F. Mongin, M. Baird, M. Jones, E. Schaffelke, B. King, E. Schroeder, T. (2016). Emulator-assisted data assimilation in complex models. Ocean Dynamics, 66 (9). 10.1007/s10236-016-0973-8

[19] Gillibrand, P. Herzfeld, M. (2016). A mass-conserving advection scheme for offline simulation of scalar transport in coastal ocean models. Ocean Modelling, 101. 10.1016/j.ocemod.2016.02.008

[18] Baird, M. Cherukuru, N. Jones, E. Margvelashvili, N. Mongin, M. Oubelkheir, K. Ralph, P. Rizwi, F. Robson, B. Schroeder, T. Skerratt, J. Steven, A. Wild-Allen, K. (2016). Remote-sensing reflectance and true colour produced by a coupled hydrodynamic, optical, sediment, biogeochemical model of the Great Barrier Reef, Australia: Comparison with satellite data. Environmental Modelling & Software, 78. 10.1016/j.envsoft.2015.11.025

[17] Baird, M. Adams, M. Babcock, R. Oubelkheir, K. Mongin, M. Wild-Allen, K. Skerratt, J. Robson, B. Petrou, K. Ralph, P. O’Brien, K. Carter, A. Jarvis, J. Rasheed, M. (2016). A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. 10.1016/j.ecolmodel.2015.12.011

[16] Mongin, M. Baird, M. Hadley, S. Lenton, A. (2016). Optimising reef-scale CO ₂ removal by seaweed to buffer ocean acidification. Environmental Research Letters, 11 (3). 10.1088/1748-9326/11/3/034023

[15] Mongin, M. Baird, M. Tilbrook, B. Matear, R. Lenton, A. Herzfeld, M. Wild-Allen, K. Skerratt, J. Margvelashvili, N. Robson, B. Duarte, C. Gustafsson, M. Ralph, P. Steven, A. (2016). The exposure of the Great Barrier Reef to ocean acidification. Nature Communications, 7 (1). 10.1038/ncomms10732

[14] Yu, J. Leighton, B. Car, N. Seaton, S. Hodge, J. (2015). The eReefs data brokering layer for hydrological and environmental data. Journal of Hydroinformatics, 18 (2). 10.2166/hydro.2015.165 https://hdl.handle.net/102.100.100/155820?index=1

Published in 2015

[13] Schiller, A. Herzfeld, M. Brinkman, R. Rizwi, F. Andrewartha, J. (2015). Cross-shelf exchanges between the Coral Sea and the Great Barrier Reef lagoon determined from a regional-scale numerical model. Continental Shelf Research, 109. 10.1016/j.csr.2015.09.011

[12] Herzfeld, M. (2015). Methods for freshwater riverine input into regional ocean models. Ocean Modelling, 90. 10.1016/j.ocemod.2015.04.001

[11] Herzfeld, M. Gillibrand, P. (2015). Active open boundary forcing using dual relaxation time-scales in downscaled ocean models. Ocean Modelling, 89. 10.1016/j.ocemod.2015.02.004

[10] Jones, E. Doblin, M. Matear, R. King, E. (2015). Assessing and evaluating the ocean-colour footprint of a regional observing system. Journal of Marine Systems, 143. 10.1016/j.jmarsys.2014.10.012

[9] Searle, R. Moeseneder, C. McJannet, D. Franklin, H. Carlin, G. Cannard, T. Hodge, J. Steven, A. (2015). Continuous Water Quality Monitoring on the Great Barrier Reef. CSIRO. 10.4225/08/5852DE03A547A https://publications.csiro.au/publications/publication/PIcsiro:EP15170

[8] Robson, B. Dourdet, V. (2015). Prediction of sediment, particulate nutrient and dissolved nutrient concentrations in a dry tropical river to provide input to a mechanistic coastal water quality model. Environmental Modelling & Software, 63. 10.1016/j.envsoft.2014.08.009

Published in 2014

[7] Robson, B. (2014). When do aquatic systems models provide useful predictions, what is changing, and what is next?. Environmental Modelling & Software, 61. 10.1016/j.envsoft.2014.01.009

[6] Mongin, M. Baird, M. (2014). The interacting effects of photosynthesis, calcification and water circulation on carbon chemistry variability on a coral reef flat: A modelling study. Ecological Modelling, 284. 10.1016/j.ecolmodel.2014.04.004

[5] Robson, B. Skerratt, J. Mongin, M. Wild-Allen, K. Baird, M. (2014). Varying the temporal resolution of river nutrient boundary conditions to a coupled hydrodynamic-biogeochemical model of a coastal system has surprisingly little impact on model results.. International Congress on Environmental Modelling and Software. https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=1265&context=iemssconference

[4] Schiller, A. Herzfeld, M. Brinkman, R. Stuart, G. (2014). Monitoring, Predicting, and Managing One of the Seven Natural Wonders of the World. Bulletin of the American Meteorological Society, 95 (1). 10.1175/bams-d-12-00202.1

[3] Margvelashvili, N. Campbell, E. Murray, L. Jones, E. (2014). Hierarchical Emulation & Data Assimilation into the Sediment Transport Model. Procedia Computer Science, 29. 10.1016/j.procs.2014.05.196

Published in 2013

[2] Robson, B. Baird, M. Wild-Allen, K. (2013). A model for the marine cyanobacteria, Trichodesmium. Piantadosi, J., Anderssen, R.S. and Boland J. (eds) MODSIM2013, 20th International Congress on Modelling and Simulation. 10.36334/modsim.2013.h3.robson

[1] Margvelashvili, N. Andrewartha, J. Herzfeld, M. Robson, B. Brando, V. (2013). Satellite data assimilation and estimation of a 3D coastal sediment transport model using error-subspace emulators. Environmental Modelling & Software, 40. 10.1016/j.envsoft.2012.09.009